Browsing Centre for Genomics and Child Health by Author "Zabet, NR"
Now showing items 1-20 of 26
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Characterising sex differences of autosomal DNA methylation in whole blood using the Illumina EPIC array
Grant, OA; Wang, Y; Kumari, M; Zabet, NR; Schalkwyk, L (2022) -
Chromatin architecture reorganization during neuronal cell differentiation in <i>Drosophila</i> genome
Chathoth, KT; Zabet, NR (2019) -
Combination of BMI1 and MAPK/ERK inhibitors is effective in medulloblastoma
Badodi, S; Pomella, N; Lim, YM; Brandner, S; Morrison, G; Pollard, SM; Zhang, X; Zabet, NR; Marino, S (2022) -
A comprehensive computational model of facilitated diffusion in prokaryotes
Zabet, NR; Adryan, B (2012-06-01) -
Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies
Zabet, NR; Catoni, M; Prischi, F; Paszkowski, J (2017-04-20) -
Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework
Martin, P; Zabet, NR (Elsevier, 2020-11-12)Transcription Factors (TFs) bind to DNA and control activity of target genes. Here, we present ChIPanalyser, a user-friendly, versatile and powerful R/Bioconductor package predicting and modelling the binding of TFs to ... -
DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
Catoni, M; Tsang, JMF; Greco, AP; Zabet, NR (2018-11-02) -
DNA sequence properties that predict susceptibility to epiallelic switching
Catoni, M; Griffiths, J; Becker, C; Zabet, NR; Bayon, C; Dapp, M; Lieberman-Lazarovich, M; Weigel, D; Paszkowski, J (2017-03-01) -
Editorial: Interactions of Plants With Bacteria and Fungi: Molecular and Epigenetic Plasticity of the Host
Fiorilli, V; Catoni, M; Lanfranco, L; Zabet, NR (2020-03-04) -
The effects of transcription factor competition on gene regulation.
Zabet, NR; Adryan, B (2013)Transcription factor (TF) molecules translocate by facilitated diffusion (a combination of 3D diffusion around and 1D random walk on the DNA). Despite the attention this mechanism received in the last 40 years, only a few ... -
Estimating binding properties of transcription factors from genome-wide binding profiles
Zabet, NR; Adryan, B (2015-01) -
An explainable artificial intelligence approach for decoding the enhancer histone modifications code and identification of novel enhancers in Drosophila
Wolfe, JC; Mikheeva, LA; Hagras, H; Zabet, NR (2021) -
Facilitated diffusion buffers noise in gene expression
Schoech, AP; Zabet, NR (2014) -
Gene Expression Dominance in Allopolyploids: Hypotheses and Models
Bottani, S; Zabet, NR; Wendel, JF; Veitia, RA (2018-05) -
GRiP: a computational tool to simulate transcription factor binding in prokaryotes
Zabet, NR; Adryan, B (2012-05-01) -
H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function
Pal, D; Patel, M; Boulet, F; Sundarraj, J; Grant, OA; Branco, MR; Basu, S; Santos, SDM; Zabet, NR; Scaffidi, P (2023) -
High-frequency recombination between members of an LTR retrotransposon family during transposition bursts
Sanchez, DH; Gaubert, H; Drost, H-G; Zabet, NR; Paszkowski, J (2017-11-03) -
Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression.
Ezer, D; Zabet, NR; Adryan, B (2014-07)The organization of binding sites in cis-regulatory elements (CREs) can influence gene expression through a combination of physical mechanisms, ranging from direct interactions between TF molecules to DNA looping and ... -
The Influence of Transcription Factor Competition on the Relationship between Occupancy and Affinity
Zabet, NR; Foy, R; Adryan, B (2013-09-27) -
Locus-specific chromatin profiling of evolutionarily young transposable elements
Taylor, D; Lowe, R; Philippe, C; Cheng, KCL; Grant, OA; Zabet, NR; Cristofari, G; Branco, MR (2022)