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This is the peer reviewed version of the following article: Kentley, J., Ooi, J. L., Potter, J., Tiberi, S., O'Shaughnessy, T., Langmead, L., Chin Aleong, J., Thaha, M. A. and Kunst, H. (2017), Intestinal tuberculosis: a diagnostic challenge. Trop Med Int Health. doi:10.1111/tmi.12908, which has been published in final form at https://doi.org/10.1111/tmi.12908. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving.