Browsing by Author "Carmagnini, A"
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Ancient genomics perspectives on speciation and domestication in canids
Carmagnini, A (2023)The genus Canis comprises at least six extant species of carnivores including human’s best friend: the domestic dog. Millions of years of natural selection and complex demography have shaped the genome of these taxa. While ... -
Article The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs
Ciucani, MM; Ramos-Madrigal, J; Hernandez-Alonso, G; Carmagnini, A; Aninta, SG; Sun, X; Scharff-Olsen, CH; Lanigan, LT; Fracasso, I; Clausen, CG (2023) -
Dire wolves were the last of an ancient New World canid lineage
Perri, AR; Mitchell, KJ; Mouton, A; Alvarez-Carretero, S; Hulme-Beaman, A; Haile, J; Jamieson, A; Meachen, J; Lin, AT; Schubert, BW (2021-03-04) -
Dire wolves were the last of an ancient New World canid lineage.
Perri, AR; Mitchell, KJ; Mouton, A; Álvarez-Carretero, S; Hulme-Beaman, A; Haile, J; Jamieson, A; Meachen, J; Lin, AT; Schubert, BW (Nature Publishing Group, 2021-01-13)Dire wolves are considered to be one of the most common and widespread large carnivores in Pleistocene America1, yet relatively little is known about their evolution or extinction. Here, to reconstruct the evolutionary ... -
Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease.
Howard-McCombe, J; Jamieson, A; Carmagnini, A; Russo, I-RM; Ghazali, M; Campbell, R; Driscoll, C; Murphy, WJ; Nowak, C; O'Connor, T (2023-11-06)The European wildcat population in Scotland is considered critically endangered as a result of hybridization with introduced domestic cats,1,2 though the time frame over which this gene flow has taken place is unknown. ... -
HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data
Dimopoulos, EA; Carmagnini, A; Velsko, IM; Warinner, C; Larson, G; Frantz, LAF; Irving-Pease, EK (2022) -
HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data.
Dimopoulos, EA; Carmagnini, A; Velsko, IM; Warinner, C; Larson, G; Frantz, LAF; Irving-Pease, EK (2022-09)Identification of specific species in metagenomic samples is critical for several key applications, yet many tools available require large computational power and are often prone to false positive identifications. Here we ... -
Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
Sinding, M-HS; Ciucani, MM; Ramos-Madrigal, J; Carmagnini, A; Rasmussen, JA; Feng, S; Chen, G; Vieira, FG; Mattiangeli, V; Ganjoo, RK (2021-10-01) -
Limited historical admixture between European wildcats and domestic cats.
Jamieson, A; Carmagnini, A; Howard-McCombe, J; Doherty, S; Hirons, A; Dimopoulos, E; Lin, AT; Allen, R; Anderson-Whymark, H; Barnett, R (2023-11-06)Domestic cats were derived from the Near Eastern wildcat (Felis lybica), after which they dispersed with people into Europe. As they did so, it is possible that they interbred with the indigenous population of European ... -
Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal
Feuerborn, TR; Carmagnini, A; Losey, RJ; Nomokonova, T; Askeyev, A; Askeyev, I; Askeyev, O; Antipina, EE; Appelt, M; Bachura, OP (PNAS, 2021-09-28)Dogs have been essential to life in the Siberian Arctic for over 9,500 y, and this tight link between people and dogs continues in Siberian communities. Although Arctic Siberian groups such as the Nenets received limited ... -
Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids
Plassais, J; vonHoldt, BM; Parker, HG; Carmagnini, A; Dubos, N; Papa, I; Bevant, K; Derrien, T; Hennelly, LM; Whitaker, DT (2022) -
Origins and genetic legacy of prehistoric dogs.
Bergström, A; Frantz, L; Schmidt, R; Ersmark, E; Lebrasseur, O; Girdland-Flink, L; Lin, AT; Storå, J; Sjögren, K-G; Anthony, D (American Association for the Advancement of Science., 2020-10-30)Dogs were the first domestic animal, but little is known about their population history and to what extent it was linked to humans. We sequenced 27 ancient dog genomes and found that all dogs share a common ancestry distinct ...